miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|41122915|gb|AU306979.1|AU306979 GCCCCATATAGAAAAGGCCTGCCGCCAGCCTCTCTCATACAGGAATGATACTAAAGGTGACCTAAAAAGCTCAGAAGAGG
GTGGGACAAATTCAGTGTATTTGTTGGAGGTGCTAGTTACCGTTAGATCAAGATGGGTTCCATTAGCACTACCAGTGTAA
GACTTTTTACAGGTGATGCAGTTTAAGACGGACGTAGGTGTAGCATCCAGTGATAAAACTGGATGAGGATTCCATGTTAG
CATGTGATGACAAATGGGACAAGCCAGCACTTGGCTCTTTGCGTTTGCTTGATTTTCGTTTAAAGCGGTTCCCGAAGTGG
TGGGGGTTGCAGCAGCAGAAGCAGCAGCGCGATTGCTTCTTGTTAGTTTCCTCCGGAACGGAAGAGATGATTTCCAAATG
GACGAAAAGAAACCACCACCACGATGATGATGATGATGATGAGTTGTTGCTGTTGCCATACATCGACTAGGTAACGCTGC
CGCTGCTGCTGCTGCTGCTGCTGACGCCATCGCCATTGGTGGTGAAGCAGAAGGAGTATCACTGCTTCGTCG




Most similar to sp|Q8LBV4|Y1814_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140,
           chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1
           SV=1
          Length = 355

 Score =  101 bits (252), Expect = 3e-21
 Identities = 50/100 (50%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
 Frame = -1

Query: 297 ENQANAKSQVLACPICHHMLTWNPHPVLSLDATPTSV-LNCITCKKSYTGSANGTHLDLT 121
           +++   + ++LACPIC++ L W   P   +++  + + + C TCK+SY+G  N THLDL 
Sbjct: 66  KDKNRGEKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSG--NETHLDLA 123

Query: 120 VTSTSNKYTEFVPPSSELFRSPLVSFLYERGWRQAFSIWG 1
           V S S +Y+E +P S+ELFR+PLVSFLYERGWRQ F IWG
Sbjct: 124 VASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNF-IWG 162